drugforge.spectrum.align_seq_match.get_idx_by_seq

drugforge.spectrum.align_seq_match.get_idx_by_seq(dir_path: str, alignments: MultipleSeqAlignment)[source]

Auxiliary function to match pdbs of a directory to entries on MultiSeq alignment object

Parameters:

  • dir_path (str) – Path to directory with PDBs

  • alignments (Align.MultipleSeqAlignment) – BioPython multi sequence alignment with protein sequence entries

Returns:

Returns equal-length lists of pdbs, idx in fasta object and labels

Return type:

(list, list, list)