drugforge.spectrum.blast

Functions

bsite_similarity(df, pdb_file[, ref_chain, ...])	Calculate similarity score for the residues in the binding pocket
get_blast_seqs(seq_source, save_folder[, ...])	Run a BLAST search on a protein sequence.
get_bsite(pdb_ref[, chain_ref, lig_ref, bs_dist])
parse_blast(results_file, e_val_thresh, ...)	Parse data from BLAST xml file
pdb_to_seq([pdb_input, chain, fasta_out])	Given a PDB file, extract the protein sequence
search_host(hit_id, user_email)

Classes

PDBEntry(*, seq, type)
PDBRecord(*, label, description, seq, chain)