drugforge.data.schema.ligand.ReferenceLigand
============================================

.. currentmodule:: drugforge.data.schema.ligand

.. autoclass:: ReferenceLigand
   :members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~ReferenceLigand.__init__
      ~ReferenceLigand.clear_SD_data
      ~ReferenceLigand.construct
      ~ReferenceLigand.copy
      ~ReferenceLigand.data_equal
      ~ReferenceLigand.dict
      ~ReferenceLigand.from_dict
      ~ReferenceLigand.from_inchi
      ~ReferenceLigand.from_json
      ~ReferenceLigand.from_json_file
      ~ReferenceLigand.from_mol2
      ~ReferenceLigand.from_oemol
      ~ReferenceLigand.from_openfe
      ~ReferenceLigand.from_orm
      ~ReferenceLigand.from_sdf
      ~ReferenceLigand.from_sdf_str
      ~ReferenceLigand.from_single_conformers
      ~ReferenceLigand.from_smiles
      ~ReferenceLigand.full_equal
      ~ReferenceLigand.get_chemical_relationship
      ~ReferenceLigand.get_schema_version
      ~ReferenceLigand.get_single_conf_SD_data
      ~ReferenceLigand.has_same_charge
      ~ReferenceLigand.is_chemically_equal
      ~ReferenceLigand.is_protonation_state_isomer
      ~ReferenceLigand.is_stereoisomer
      ~ReferenceLigand.is_tautomer
      ~ReferenceLigand.json
      ~ReferenceLigand.model_construct
      ~ReferenceLigand.model_copy
      ~ReferenceLigand.model_dump
      ~ReferenceLigand.model_dump_json
      ~ReferenceLigand.model_json_schema
      ~ReferenceLigand.model_parametrized_name
      ~ReferenceLigand.model_post_init
      ~ReferenceLigand.model_rebuild
      ~ReferenceLigand.model_validate
      ~ReferenceLigand.model_validate_json
      ~ReferenceLigand.model_validate_strings
      ~ReferenceLigand.parse_file
      ~ReferenceLigand.parse_obj
      ~ReferenceLigand.parse_raw
      ~ReferenceLigand.print_SD_data
      ~ReferenceLigand.schema
      ~ReferenceLigand.schema_json
      ~ReferenceLigand.set_SD_data
      ~ReferenceLigand.set_expansion
      ~ReferenceLigand.sort_confs_by_sd_tag_value
      ~ReferenceLigand.to_json_file
      ~ReferenceLigand.to_oemol
      ~ReferenceLigand.to_openfe
      ~ReferenceLigand.to_rdkit
      ~ReferenceLigand.to_sdf
      ~ReferenceLigand.to_sdf_str
      ~ReferenceLigand.to_single_conformers
      ~ReferenceLigand.update_forward_refs
      ~ReferenceLigand.validate
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~ReferenceLigand.canonical_tautomer
      ~ReferenceLigand.fixed_inchi
      ~ReferenceLigand.fixed_inchikey
      ~ReferenceLigand.flattened
      ~ReferenceLigand.has_defined_stereo
      ~ReferenceLigand.has_multiple_poses
      ~ReferenceLigand.has_perceived_stereo
      ~ReferenceLigand.inchi
      ~ReferenceLigand.inchikey
      ~ReferenceLigand.model_computed_fields
      ~ReferenceLigand.model_config
      ~ReferenceLigand.model_extra
      ~ReferenceLigand.model_fields
      ~ReferenceLigand.model_fields_set
      ~ReferenceLigand.neutralized
      ~ReferenceLigand.non_iso_smiles
      ~ReferenceLigand.num_poses
      ~ReferenceLigand.size
      ~ReferenceLigand.smiles
      ~ReferenceLigand.target_name
      ~ReferenceLigand.compound_name
      ~ReferenceLigand.ids
      ~ReferenceLigand.provenance
      ~ReferenceLigand.experimental_data
      ~ReferenceLigand.expansion_tag
      ~ReferenceLigand.charge_provenance
      ~ReferenceLigand.bespoke_parameters
      ~ReferenceLigand.tags
      ~ReferenceLigand.conf_tags
      ~ReferenceLigand.data
      ~ReferenceLigand.data_format